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Background

  • Workflow
  • Software components
  • Barcode Data Standard
  • BWP Data Standard Extension
  • Naming conventions

FIMS

  • Populating the FIMS spreadsheet
  • FIMS spreadsheet validation and upload

LIMS

  • Geneious introduction
  • Connecting with the Geneious Biocode Plugin
  • Generating extraction plates
  • Generating PCR Plates
  • Generating cycle sequencing plates

Sequence Assembly and Publication

  • Downloading traces from LIMS
  • Assembling contigs
  • Quality control of assembled contigs
  • Marking assemblies as Pass or Fail in LIMS
  • GenBank Upload
  • Annotating for ITS GenBank Upload

Troubleshooting

  • LIMS Connection Troubleshooting
  • Migrating the BWP LIMS Database
BWP Informatics SOPs
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© Copyright 2015, Niamh Redmond, Mike Trizna. Revision d02a7192.

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